NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181395_1002347

Scaffold Ga0181395_1002347


Overview

Basic Information
Taxon OID3300017779 Open in IMG/M
Scaffold IDGa0181395_1002347 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7502
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (8.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033254Metagenome / Metatranscriptome178Y
F035957Metagenome / Metatranscriptome171Y
F066695Metagenome / Metatranscriptome126Y

Sequences

Protein IDFamilyRBSSequence
Ga0181395_100234716F066695N/AMAELLTDDIIYEALEADGIMQEPDANWLLEYINTEYGGELDKDSSWSDNKHELKIYSESTADGYDIYWCTYDEKPYVSQDGYYYEDHSEWSEQAIEALCDGQKVWVESHIWDDMEYEFNHALEQWWTDIYEDIFCADKKDELLDSGDYYEDKK
Ga0181395_10023477F033254N/AMRKHKHNKIWSFSDEHVIDGMIYSHDIEKWVTVEEYTDYYYA
Ga0181395_10023479F035957N/AMSRYFDDLTLEEMFEHHDHTYMMSDDNRAYENGRYQRDIMYAKVKKQGGWTKELVDLYNKYAPEGMFQMDYDFLTNKAG
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