NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181395_1035118

Scaffold Ga0181395_1035118


Overview

Basic Information
Taxon OID3300017779 Open in IMG/M
Scaffold IDGa0181395_1035118 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 18 SPOT_SRF_2010-12-16
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1685
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F078604Metagenome116Y
F090494Metagenome108N

Sequences

Protein IDFamilyRBSSequence
Ga0181395_10351181F078604N/AMSNDFYIISTNSYIKNVSHFLDMNFLKELKTNNNQLKPHVKDLDINATYYGKKCIKATIPTLFVEITYKDSEKDTFLIDYDVFLYEEDYPTLKDLENYKNKFNFNFASQVEKEVYEIVEAFHQGYGCMCLSS
Ga0181395_10351182F090494AGGMSTKHTHTFKAFQTKHNLSYSNFFTFTNPKVLKNEKISEIPTAILMLMNTPKACPAAGSCREVCLITSGNPIYLDNKIKCRIRRNNAFINDYSIFLRYLVVNCFRHYSKNRSVEKVGFRLNGVSDYSWENFSVKLTSEDTDYIQKAFNIYIEPIRYGSVIEAVQKAIDLNDDSLIKNSVQFYDYSKNIFRDFKKIKALNYHITLSHGSKYDTFSKALELGLNYAAAFNLKKSQQLPTKFEYKGKSLNVTDGDITDARFIDDNKTTNIVGLRFKIVVNKDNAKKLEFCIA
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