NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181380_1005064

Scaffold Ga0181380_1005064


Overview

Basic Information
Taxon OID3300017782 Open in IMG/M
Scaffold IDGa0181380_1005064 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5339
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (28.57%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012863Metagenome276Y
F022875Metagenome212N
F042875Metagenome157N

Sequences

Protein IDFamilyRBSSequence
Ga0181380_10050641F042875N/AMDMNHQVDSFTFDLDNLIRRYQIEYDLSDQALVGALELVKLTILTDSSILFSPEDIDEDGLDDGTISPHF
Ga0181380_10050643F012863N/AMKNYKEYLDYCQSLAEDINESYPDTIEILDRIHEIADGCLYVIYHSKAWDLVNMMREYNYELFAHAVEEVRDNGFEFEGDIDRHMAWIAFFLIRNGVYSAYQQTGAKEVMA
Ga0181380_10050648F022875N/AMKTKLNITGLTEEIKENIRVRAKQHINSTDPCPDHWDSIETPDGFVDFNIWQDDDYKNGEWIVTCYETYISIDNGYRYTDTETSERLAL
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