Scaffold Ga0181380_1014726

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181380_1014726

Scaffold Ga0181380_1014726

Overview

Basic Information
Taxon OID	3300017782 Open in IMG/M
Scaffold ID	Ga0181380_1014726 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2965
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (11.11%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp.	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012575	Metagenome	279	Y
F055560	Metagenome / Metatranscriptome	138	Y
F066795	Metagenome	126	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181380_10147262	F012575	GGAG	MSVTEYIEDVPFCYRIVSDYKEVYIQWHMKDLPHLFTGRASSHEEKIEQYKSVLKELKKLNQTKQINQHEIYNRKK
Ga0181380_10147264	F066795	N/A	MNLSKTFPKMSNNDWRKLQLSTDAKNQRDWASRRLHDMENDPDNFTLRDYLKVRAGYNTAVETLKELQ
Ga0181380_10147265	F055560	N/A	MKKPINHSDIDELFTSLKPSKKEQAIVWLVSPVIVLATWGVLIFICSL

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