NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181380_1020632

Scaffold Ga0181380_1020632


Overview

Basic Information
Taxon OID3300017782 Open in IMG/M
Scaffold IDGa0181380_1020632 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 3 SPOT_SRF_2009-08-19
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2457
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008547Metagenome / Metatranscriptome331Y
F046345Metagenome151N
F052535Metagenome142N
F057323Metagenome136N

Sequences

Protein IDFamilyRBSSequence
Ga0181380_10206324F046345N/AMHTWGDSFLLTSQNTNIKMNIKINVREDNMGCLYLTPVKRSYIDQIIEYLKEFNVDSDGSVLIQSDYEVESFYEDCTYSQKRDIQSGWGATMLFDAWTFLNYIGWDACEGLELK
Ga0181380_10206325F052535GGAMKRPYEVLALDDSNTPVRIATIIENSKPKAKATGQKLAKSLNQRFHNVQLIKE
Ga0181380_10206327F057323GAGMKILVLTIRAHGEEDDIYVFANREVNVLPTIKEWLEDNNIKLTLPDHVTDTHSFMEWFYDAENSLEIGTDFFVGLQYKELLSE
Ga0181380_10206328F008547AGGAGMSVTIYLTDHNGKQIAFFYRIDNERYLTCPQLIWACRQHPEYQGTAESKEHFIEQAKGVIKELGKRSVPVCKDCGLTIHGKDFESHDKCPDC
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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