NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181379_1004367

Scaffold Ga0181379_1004367


Overview

Basic Information
Taxon OID3300017783 Open in IMG/M
Scaffold IDGa0181379_1004367 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 2 SPOT_SRF_2009-07-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6248
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011269Metagenome293Y
F011396Metagenome / Metatranscriptome291Y
F082616Metagenome113N

Sequences

Protein IDFamilyRBSSequence
Ga0181379_100436712F011269GGAGMEFFTAFYIEYTVRNMDIQTYILLPSYEACQVMIRDNEDMSEYMFADSSVDMWCIQTDKLSKSIAPVLRPE
Ga0181379_100436714F011396GAGGMNDIPDYFAIAAKIIERAERGLPQDRWMRGDHEMEALVRAYIALLNTCSNMHHDMIQRGSDAMDIS
Ga0181379_10043679F082616AGGAMIGYIACPECNGKGYIERERVAPWIDRDTPPDLVAYDEVCELCQGDGEIETNKHEEDDD
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Institute for Fundamental Biomedical Research
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