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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017784 Open in IMG/M |
| Scaffold ID | Ga0181348_1002791 Open in IMG/M |
| Source Dataset Name | Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7764 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 17 (73.91%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (83.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan | |||||||
| Coordinates | Lat. (o) | 43.1998 | Long. (o) | -86.5698 | Alt. (m) | Depth (m) | 110 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F003784 | Metagenome | 468 | Y |
| F013279 | Metagenome / Metatranscriptome | 272 | Y |
| F014590 | Metagenome | 261 | Y |
| F040588 | Metagenome / Metatranscriptome | 161 | Y |
| F055450 | Metagenome / Metatranscriptome | 138 | Y |
| F068766 | Metagenome | 124 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0181348_10027911 | F040588 | N/A | LALGYLYSIVKPDMDVAYAKRHARKAVEIASVLDANTGKPLQLVVQERM |
| Ga0181348_100279113 | F003784 | GGAGG | MYDDDRKRVGHNVTDFAAYGLSHLATGQSNTIDTDTPTANPLVDHAAVTGYRAMGVSTEDLTSFIESFASLRAHRVKGVGHDQYSHAKGQKFESFTTSDTIRELIEELADASNYIDFLAIKLLNIQHTIDRVLPDCD |
| Ga0181348_100279115 | F013279 | AGGAG | MMYDYRCPDCNSELTIERSIHEEPREPTCFDCHVSMIRKWDSPSVAFKGKGFYSTDK |
| Ga0181348_100279116 | F014590 | GGAGG | VRTRHLQLVTHEHSATTSNRSGALSPYGPAKAGSTTSRITRDQALTELLNSLENVVADLNYKSFTALDTLHTAIQGVRVALYNTATEEAGTDTV |
| Ga0181348_100279117 | F055450 | GGAGG | MEANNKRLRGAANQAVRQRNYRRARDRALVRLAHLYPDTYKQLLEMEKNTDEQEGKTWLDLDGNTIPVVGVRIRTADGRGAPVLKENLSKGTDEGDNGGEA |
| Ga0181348_100279120 | F068766 | AGGAGG | VSEDNVVGFHPKNKLVNFYEIATEDGKAVWGGEDPHSAVQWLRQSPLNSRLLVSCWEAGEEDARLIIEPIDITKVIYAVLAGAQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |