NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181348_1010635

Scaffold Ga0181348_1010635


Overview

Basic Information
Taxon OID3300017784 Open in IMG/M
Scaffold IDGa0181348_1010635 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3998
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (12.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1998Long. (o)-86.5698Alt. (m)Depth (m)110
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F046327Metagenome151N

Sequences

Protein IDFamilyRBSSequence
Ga0181348_10106352F046327N/AMIVWGGGSNDEDKDYRNAIKALAFQSGNEGQKAIDTTRGRKNDRVRLALDELPEMELGAITARVNLSANNDVVFIGIGNPSAGDNPHTRWAMPKGASNFDVVSPEMDRWETETGVCLFYNGMRSPNFQAPIHEPSPFPFLMDRKKQEIMLKQCYGDENAIDYVRNAIGWWPKSGFAQTILTADLIRNAETNIEPIWDAEGFTKVAGFDTAFTVGGDRCVLTVAKLGYIRGTRNKVMWLEKQDVIQLSAREAAEFEVGLAKDVVEKCRTYNVQPQKFGMDVSGDGGRVGQAIIREWLKFDTSGHSIVLISSMGKPTERMAAEVDKRPCNEVYDRLVSEYWYSAYHGFKSRVIYGVESAGALARELCIRRYKLKSKKISVETKDDYKGRTGFSPDLADSFLYCLEMARRYGLVFIGNDKAVPTNRFWARDEKLIAALEDDSYSSDENGDW
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