NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181355_1022810

Scaffold Ga0181355_1022810


Overview

Basic Information
Taxon OID3300017785 Open in IMG/M
Scaffold IDGa0181355_1022810 Open in IMG/M
Source Dataset NameFreshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.D.N
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2726
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake → Freshwater Lake Microbial Communities From The Great Lakes, Usa, Analyzing Microbial Food Webs And Carbon Cycling

Source Dataset Sampling Location
Location NameUSA: Michigan
CoordinatesLat. (o)43.1881Long. (o)-86.344Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006300Metagenome376Y
F020893Metagenome221Y
F040084Metagenome162N

Sequences

Protein IDFamilyRBSSequence
Ga0181355_10228102F040084GGAGGMALRDEIRIKQNRLADLTIWLDAQPNGEEWYEVIYDQQYSSQAVAGLLTKHGFKADANLIARFRNKHVAK
Ga0181355_10228103F020893GAGMPTEIYVALISGIAIICAAVLPAVLIERARKENADDHQYVRKILTRVERKIDNHLEDHDNGVTRRNKNQAK
Ga0181355_10228105F006300N/AMKWAPMLEDWLKAFVAGSVAVLITSNYNVEGALKAGLAAVLPMIYAWANTKDSRYGRK
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