NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181424_10006494

Scaffold Ga0181424_10006494


Overview

Basic Information
Taxon OID3300017786 Open in IMG/M
Scaffold IDGa0181424_10006494 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5091
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030436Metagenome185N
F038672Metagenome165N
F056150Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0181424_1000649411F030436N/AMKSTLDRIAKIIKEYKQTDVFDGNSLNKQLKELTAYLYHIETIRTKAHNDFEKVIHNRVKEGFSVARATNEANVEVPEMYELRRLLESGYRVIDAMRTNISFLKSEMYNVTKEY
Ga0181424_1000649414F038672N/AMDELDVILRKNKLDIMIIKASAEVEKNNNKVKKEGLEVLMDILELIHDLQHEIRQDNRLISKLKYENAVAYKENAILKADFSKYKHQLIKAELETPNKT
Ga0181424_100064948F056150GAGMDKKLIKKIENFILWIGREYNVVELQDFKQDIFMILLNKGEDFIIQLDKENSVKKYVYKLCLYQIISERGQYQTRYYLPSQFSSIEDIETYSNTCFKDQVLKDLINSLDGLDRIMMEQLLICSGNRNCLAEKSDIHRNTIQYKFKELANKIKKKWTLNEFYS
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