Scaffold Ga0181424_10029757

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181424_10029757

Scaffold Ga0181424_10029757

Overview

Basic Information
Taxon OID	3300017786 Open in IMG/M
Scaffold ID	Ga0181424_10029757 Open in IMG/M
Source Dataset Name	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2370
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Rhodospirillaceae → unclassified Rhodospirillaceae → Rhodospirillaceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location Name	USA: California
Coordinates	Lat. (^o)	33.55	Long. (^o)	-118.4	Alt. (m)		Depth (m)	5
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F008915	Metagenome / Metatranscriptome	326	Y
F026438	Metagenome	198	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181424_100297571	F008915	AGGGGG	VNNEVNLDLYEMQSAAHLGILRCLESKKHKESWGYNYKGSLNDQMAKSISGAMGEVAASKFLGIKFEYHCNVGGVPDLIFKDLKLQVRTQIPKNNNSLIIRPKAKPGELYILIIDEAPKFKILGFVNSTYVLGQEQWKTTFGLDRPFCYSIPPEKLTPINLLKDSTWN
Ga0181424_100297574	F026438	N/A	MANHINVIGDSYTKFGLKHTSKSTACLPHTIRFFKKHILTPKENSEISNASFIGGTLIHMIVQESLTKKLSLDEVIKSELIQTKIDNYEPNDEKDKKKFEFIVKAAPETAQNHLDNIDDLGQYEWSDEQEQVLWTPPVNTYWLMYIDLIGKLAKDKDPEVLGDLKNKFGTVTLTKTKGWTYTNVKCPDRPFYSDVQQVSLYQKATGLKPFLSYASNCDRKLFTQ

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