NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181424_10036496

Scaffold Ga0181424_10036496


Overview

Basic Information
Taxon OID3300017786 Open in IMG/M
Scaffold IDGa0181424_10036496 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2130
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022632Metagenome / Metatranscriptome213N
F051866Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0181424_100364962F022632N/AMKKLILLFLFISCSDTIYVERPIQEVPETLFMPQAIGLKLESYIVQDKVRINTKLPRDGKYRIKILDFSNTIINQEIITGKEGDNILNIYVNSLPVSSYTVELYTNTNDFIGRQTFSMK
Ga0181424_100364963F051866N/AMKEIKTQIITAIGLIITAGAALVVSNMEAWFSPEIDSPPPSMEQTISIPPGVVKDTLVITKTVIQKPKEEKR

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