NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181424_10051818

Scaffold Ga0181424_10051818


Overview

Basic Information
Taxon OID3300017786 Open in IMG/M
Scaffold IDGa0181424_10051818 Open in IMG/M
Source Dataset NameMarine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 47 SPOT_SRF_2013-09-18
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1777
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Strait → Unclassified → Seawater → Marine Viral Communities From The Oligotrophic San Pedro Time Series (Spot) Site, San Pedro Channel, Ca, Usa

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)33.55Long. (o)-118.4Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007985Metagenome / Metatranscriptome341Y

Sequences

Protein IDFamilyRBSSequence
Ga0181424_100518184F007985N/AMGVTKNMQQYKVNNTIFNNIEDATAHVSTLNKAVTISPYTPPSKASIKLNVVRNMLIREMLEWAGSFVHSMSPSTDVNWMYSFEDADGNSDAGDCYYEDCVNVTFGNNLMWEDALHDYQSAVDNFDCLLGDYNSVDSVEGLSDMLNNMYHTMSDHSSETDDYIGCVRDSIKRMCEGNDNIAHSYHHPSRRTTI
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