Scaffold Ga0183260_10021758

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0183260_10021758

Scaffold Ga0183260_10021758

Overview

Basic Information
Taxon OID	3300017787 Open in IMG/M
Scaffold ID	Ga0183260_10021758 Open in IMG/M
Source Dataset Name	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	4882
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (75.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand → Polar Desert Microbial Communities From Antarctic Dry Valleys

Source Dataset Sampling Location
Location Name	Antarctica: Dry Valley
Coordinates	Lat. (^o)	-78.0827	Long. (^o)	164.1679	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078551	Metagenome / Metatranscriptome	116	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0183260_100217584	F078551	GGAGG	MERDTGNLHELSVEQAAVLLGLPVVAVAGLAVAGFLEPSAIDPDSGHPFFTISDVKAFQARNADNGSGFLAFSGEPKADPQELLAALDGESEDMARRAFDIFAQVFPEANRWGLREQQRFITQARGRFEAILAVTGSGAEVDEALVGDLQDVGADAAWSGSPLPQLLVVLRISRDLVVQTAVELAEARGGRWGLALSLLLTRILPAVDRLTDSLAQGYWAAMIGKEEDA

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