Scaffold Ga0169931_10037954

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0169931_10037954

Scaffold Ga0169931_10037954

Overview

Basic Information
Taxon OID	3300017788 Open in IMG/M
Scaffold ID	Ga0169931_10037954 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	5489
Total Scaffold Genes	6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (16.67%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location Name	Rwanda: Western Province
Coordinates	Lat. (^o)	-1.78	Long. (^o)	29.2	Alt. (m)		Depth (m)	15
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F039946	Metagenome / Metatranscriptome	162	N
F053825	Metagenome / Metatranscriptome	140	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0169931_100379545	F039946	N/A	MGLLGKIILNEGITIFRCDILIKTEAEQNKVEIYNEIRGLQDVVVVTIEQSDFLDAKATDKYEYSLLKMKYIGRGDAKESVKKIGIDAVTKNRVPGLLQFIPRYNTIIKVGSY
Ga0169931_100379546	F053825	AGTAGG	MKLIDILKELEKPKQIYADREPGKEITIADLTPEERDELFKKGSIMISLPPDPSRPEVTSASQVINLPKVDQVKKDIIKNKQEFDVFMFSPDKDIKEVAKEINALYNKLFRVTNALDK

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