NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0169931_10449951

Scaffold Ga0169931_10449951


Overview

Basic Information
Taxon OID3300017788 Open in IMG/M
Scaffold IDGa0169931_10449951 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Kivu, Western Province, Rwanda to study Microbial Dark Matter (Phase II) - Kivu_15m_20L
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)929
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location
Location NameRwanda: Western Province
CoordinatesLat. (o)-1.78Long. (o)29.2Alt. (m)Depth (m)15
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010746Metagenome / Metatranscriptome299Y
F016115Metagenome / Metatranscriptome249Y
F035200Metagenome / Metatranscriptome172Y

Sequences

Protein IDFamilyRBSSequence
Ga0169931_104499511F016115N/AILEESFTSKGFKLQQVKRDGDIAIYKKQLDDPEAYNYHYEVIAIKRHNGYEIAGVKMPPAEMYPSDSQWGDWAFTCNTIEDATKRFNYLQEKLTNYNATAISQSGEKRGRGRPRKNPLTEKENIVE
Ga0169931_104499512F010746AGTAGMTYYCSVSGEALPPERVEALQVLGVPESLWTKKEYSQVKKLRAVYAGDDGSNDIVICDKVDGGNLFDNEVVAEIENDI
Ga0169931_104499513F035200GGAGMTSKFIVLRDGIRVSDDMHDRSEDAEHEANFWREIIKRWPDGTKVTIKKIGG
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