NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0188953_10368

Scaffold Ga0188953_10368


Overview

Basic Information
Taxon OID3300017813 Open in IMG/M
Scaffold IDGa0188953_10368 Open in IMG/M
Source Dataset NameSaline water viral communities from Saloum River inverse estuary, Senegal ? P2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterGATC-Biotech AG, Konstanz, Germany
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5810
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Unclassified → Unclassified → Saline Water → Archevir - Metagenome And Diversity Of Hyperhalophilic Archaeoviruses

Source Dataset Sampling Location
Location NameSaloum River, Senegal
CoordinatesLat. (o)14.0536Long. (o)-16.2885Alt. (m)Depth (m).5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F103357Metagenome / Metatranscriptome101N

Sequences

Protein IDFamilyRBSSequence
Ga0188953_103685F103357GAGGMQITQQQYQQAIKNALAAGDQAAAQELAQAAADLYGPPTTTPPVSNMFGPEMAARETLRGELKRFGPEVSRRVQNVMGDDPNLLRQLYQVPELALIGGSQAARAGGATLATYISSWIPNSVKEGAEAVYDRIKDTDTFRLAAQAASLGDAGYQAFKQRMPAAAERFESAVDVGLLFSPRPDIPRLDVAKRVAQKEATRLVRENKKDGVTLLLEPVTPEMRDVFEEKGVLRTKTWEPSDFDNLVIDTVTDMKGVKPNRSYTYNYREVQKEVAATKEATDKMIVAQNKAIDSDKFLKDMQKAVNEVLKDDIVRIATGDIQKQLADLSEIVIESVQTRGSDLVGVLEVRRKFDDLINNFDGTPNAKSIAARKIRGVLNDTLKANTRGDKLHNLLTKQFHGITAMEAMLPKRNAEARDVVSRTVRNLQSVDLLPNTVLALGATGTTALGYAGGSVPAALAGALGATTYLTIQTLKPRNAARIYASMLSAVDKAIPLTKGTALKELEMDRILLVDLIDQTREEIKEEEQAELRNSIREANQRNTGENQ
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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