Scaffold Ga0181565_10000464

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0181565_10000464

Scaffold Ga0181565_10000464

Overview

Basic Information
Taxon OID	3300017818 Open in IMG/M
Scaffold ID	Ga0181565_10000464 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	30077
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	26 (81.25%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → unclassified Rhodobacteraceae → Rhodobacteraceae bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F065835	Metagenome / Metatranscriptome	127	N
F088866	Metagenome	109	N
F105362	Metagenome / Metatranscriptome	100	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0181565_1000046411	F088866	AGAAG	MSKQKQQGTKLETFVAKMLNGSRIAEGGINDKGDVLFNWNGQDFFIECKARQSLNVTRELAKSIKKSKSQFTALVWKRLVKTDKSRRQPDGVPIIVCLTLDTFVEIVESKIGNSFYDDPFWKQLP
Ga0181565_1000046431	F065835	GGAG	MTDETMESMETNEGIKGLREKLKSVEQENKELKNVVKTSLFKDVGLDPHSGTGKMAFDLYDGKPDTAELGQWLKETYNIDTEVQQNNEVAAAKIAESDDKLTQIQQNSVAAQPADWTQKMQDVIASGDTSVRDSLRAKLALQEELKRK
Ga0181565_100004644	F105362	AGGAG	MSAPDPMDRDVKVMFSDLSTRDYIITASNLKEAEEVFDTIFNHMEQSITDILKQYSVGKKTKVWVEYHIDKVQDMNEEEND

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