NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181565_10006352

Scaffold Ga0181565_10006352


Overview

Basic Information
Taxon OID3300017818 Open in IMG/M
Scaffold IDGa0181565_10006352 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9029
Total Scaffold Genes26 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (92.31%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026855Metagenome / Metatranscriptome196Y
F040583Metagenome / Metatranscriptome161Y
F054790Metagenome / Metatranscriptome139Y
F100635Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0181565_1000635211F026855AGGAGMNTYEVEVQGHYCAVMVVEASSPEEAENEAIRAFESDYDVCDRSGADSWDHTSIVSSELVVD
Ga0181565_1000635223F040583AGGAGMFVYLVTTTDGYETRVTTAGDPTDHPAFAGRVLDVQTLGEADLHAV
Ga0181565_1000635226F054790GGAGMTLTDVWLSVYSTFQDNAFDYVGAPFYNDNDGTIQLWNGSK
Ga0181565_100063527F100635GGAVIKLYEIDWGAEPFYWDVYDSQDEFLMVVEADEFDDYLDTLRYDGVDFLVYTQDWYQHNLALGGAVS
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