NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181565_10008057

Scaffold Ga0181565_10008057


Overview

Basic Information
Taxon OID3300017818 Open in IMG/M
Scaffold IDGa0181565_10008057 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8010
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (92.59%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026855Metagenome / Metatranscriptome196Y
F040583Metagenome / Metatranscriptome161Y
F041146Metagenome / Metatranscriptome160Y
F042289Metagenome / Metatranscriptome158N
F054790Metagenome / Metatranscriptome139Y

Sequences

Protein IDFamilyRBSSequence
Ga0181565_1000805712F054790GGAGMSLTDTWLSVYSTFQDNAFDYVGAPFYNDNDGTIQLWNGSKMITYAEVPF
Ga0181565_1000805717F042289AGGAGMIDGIFRIEEMRAEDTPYEFETRIGSANVTMRRDYDADFNGRIYFSFPNISWCDPFYVDADEPVAVLVEETWEEAALDIEFDLMKKGIV
Ga0181565_1000805722F026855AGGAMPMFEVEVIGHYTAVIEVEAETDHQAEEEAISVFESDYDVVSNMGGDSWDHTSIAGVEEV
Ga0181565_100080576F041146GGAVETIHLYQIDGGITYWEGYSDYTNSYLFSLDDDEVGDYISQNKDKDIRVYPQEPYTAMYHIHLEMDKWWGRDDYHVDDCPAIHDPREQLEYLCEGCQQFEKWAKNKTYGDYYKKEKVGNY
Ga0181565_100080579F040583AGTAGGMFVYLVTTTDGYTARVTTDGDPTEHPTFAGRVLSVETLGEAELHAV
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Institute for Fundamental Biomedical Research
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