NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181565_10013801

Scaffold Ga0181565_10013801


Overview

Basic Information
Taxon OID3300017818 Open in IMG/M
Scaffold IDGa0181565_10013801 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6063
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034398Metagenome / Metatranscriptome175N
F040080Metagenome162Y
F052272Metagenome / Metatranscriptome143Y
F061813Metagenome131N
F063185Metagenome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0181565_1001380110F034398AGGAGGMIAEQYRNIKPHFVHADHMPVVHRWSCILLDQDTENPPFEPARYFVVNVFAETKDAVLDCLGEEYPWCDIMYVDKALGGHTDDDFLEAWLHYFDAKEAIPVRSAPHGNNYDK
Ga0181565_1001380113F063185GGAGGVEYQSKYMADYYADNEPHEFVVTQERTILVQYTVEASSLSNAVAQIEEGDYSGVIDEDASHAETDKKGRIVSARVNDNDN
Ga0181565_100138013F052272GGAMKTETTLNFTDAQLNELKRLVDVVGWSTRNDETGHIDTYVSEDRVRFARNLAGVLSNMDSLALIGTKDTSL
Ga0181565_100138014F040080AGGAMKTFNDFKTDLETLRTDLNATTYRVEKVQELLGDLVEKLDGLYDQSVSNKDQAVDLVRAVDNIKPKQEDRPLRSTHYRMLAILAHYGTMEREHIAGIMGVKPETIAQYTHIVKHHGLADLQSRKGRVTLYSLADEVRENTNFKI
Ga0181565_100138019F061813AGGAGMAITTISNENKTRVEFLVYKQVKECNELLQKASDILNDTGDTESTTLDNAMSHLKCATEMTGRYLEENA
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