NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181565_10020456

Scaffold Ga0181565_10020456


Overview

Basic Information
Taxon OID3300017818 Open in IMG/M
Scaffold IDGa0181565_10020456 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4923
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (90.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001655Metagenome / Metatranscriptome656Y
F002858Metagenome / Metatranscriptome525Y
F023856Metagenome / Metatranscriptome208Y
F024320Metagenome / Metatranscriptome206Y
F073499Metagenome / Metatranscriptome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0181565_100204564F073499AGGAGMMTEQQIEQWIRDNPWKANVIYPAGGIGFMMFVMYTCIQIIDSFLTGSFI
Ga0181565_100204565F001655GAGGVKQPENSHAKHFGNDGPIGNDAEIIVYYEQHGPAEPVLRIPFWYCKDELGLFENFEAAVRRTAKALAESYTYWPEGYVHVQTIINEEYVNII
Ga0181565_100204567F002858AGGAGMLIDEKSIYEVTGGDYSVYCFGYTQARTVTNDIMKRDPWGGIPFVIRKDLEVSFDDKGNVVMPRVVLDKILFIASDELPEGDE
Ga0181565_100204568F023856AGGAGMRCKACDRILEESELTRKDTHGDFLDLCGICLSATASAGVDTETMEYYQYEIFTEDKDYDTLY
Ga0181565_100204569F024320AGGGGGMTFEEYEQGYYSGDSEDPSGPPEDPEMHAMVEHLVEFDTEMYRLESRRKYKGLSYKHLEMLMVELHGKEWRDAL
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Institute for Fundamental Biomedical Research
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