NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181565_10022022

Scaffold Ga0181565_10022022


Overview

Basic Information
Taxon OID3300017818 Open in IMG/M
Scaffold IDGa0181565_10022022 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4726
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025477Metagenome201Y
F028516Metagenome191Y
F100998Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0181565_1002202210F028516GGAMNLYQKLKPEIKHRLHRNSDKYAVSVNGIIDRLKSARYYNELTIGDIKQIRAFGDVTSTDILWPDTLFNSKI
Ga0181565_1002202217F100998N/AMTIDNKIKKLQESFELRAEIADMMWEVDRLVEIEQAYVDAEEYEKAGIILARQKRLNRLIKNREKKLKQYDDTF
Ga0181565_100220225F025477N/AMSNYKAYQSIKLGEGTTEKDLYDLFGDAVSVYDENGNEIKGYLKLKYNKRNGWNNK
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