NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181565_10031280

Scaffold Ga0181565_10031280


Overview

Basic Information
Taxon OID3300017818 Open in IMG/M
Scaffold IDGa0181565_10031280 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3916
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F042289Metagenome / Metatranscriptome158N
F070017Metagenome123N
F084122Metagenome / Metatranscriptome112Y
F105002Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0181565_1003128010F042289GAGGMIDGIFRIEEMRADECPDEFLTRVGNANVTIWRNRLADYDGKLCFSFPYISWCDDMYVAPDEPMAVLVEETWEEASLEIEFDLMKKGLV
Ga0181565_1003128012F084122AGTAGGMFYYNVKFTNGESLVILSDGDPVDEVPVEFQGDVIDVTTICEVAV
Ga0181565_100312806F105002GGAGMEYFNKWYAVMQYDAMTKEYVELVKRPQKHLCYEYINDRKLRNAKVVAYYW
Ga0181565_100312808F070017AGGAGMNCDFCDTPLSDERAEIYSHCSSDNCVVMWRRMRLEDFALTLVPKQGFQIVYKDNNFLKVGGRSSGKVT
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