Basic Information | |
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Taxon OID | 3300017818 Open in IMG/M |
Scaffold ID | Ga0181565_10056338 Open in IMG/M |
Source Dataset Name | Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2831 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (16.67%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Georgia | |||||||
Coordinates | Lat. (o) | 31.972 | Long. (o) | -81.028 | Alt. (m) | Depth (m) | 0 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F002307 | Metagenome / Metatranscriptome | 572 | Y |
F033271 | Metagenome / Metatranscriptome | 177 | N |
F040951 | Metagenome / Metatranscriptome | 160 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0181565_100563384 | F002307 | N/A | MNRQKNFYRFKPIKRTLRNAGFVLDDFATHIDKKQLSFRHPYIYTGMAIAAVGVMIANKHYGFGLY |
Ga0181565_100563385 | F040951 | AGGAG | MIISYEEPPNRKHFDSEEDYQKAFKEWKEVFDSILEKHGNFGSN |
Ga0181565_100563386 | F033271 | N/A | AKLHRMVLMKKNIYLLSLLFLFSLKSYSSAETFEENYACGVDMYMLSSILRLQFEESKDIEIRKEVIREHTLWEKVNLSLLSEREPDIAKRLEKLRKDMAKRLTSLHEERGLENILTENFVNEATDGCFGDTKIQKVYNLYYAGMKNG |
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