NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181565_10069710

Scaffold Ga0181565_10069710


Overview

Basic Information
Taxon OID3300017818 Open in IMG/M
Scaffold IDGa0181565_10069710 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2517
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006940Metagenome / Metatranscriptome361Y
F023488Metagenome / Metatranscriptome210Y
F069469Metagenome / Metatranscriptome124N

Sequences

Protein IDFamilyRBSSequence
Ga0181565_100697101F023488N/AKLGNTNRLRMSEGFKLATDRQYAPFIHGKPIFRGFSPIRRTRPFFPPYKEGSSLAKWARRGQPKLNPFLVARAISKRGLKMKPFIGGVVYEKQKEIKDRGQEMLELIARDIARSVK
Ga0181565_100697103F069469GAGGMKVKILVGSDFTLDKKDKRVEAREVLDLPDKIAKALIKNNAAEKFDSKMMKEEEE
Ga0181565_100697106F006940AGGAGGMKRLSLDDISNAPSLPEKEIEIPEWDATVLVTGLTKADAVEINELSEKDGVRDEVLFEKHLLLKGLKEPQFDDLDQVEEFYSKATPSIVDKVLIGIYRCMAWTKEDQASIASEFPE
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