NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181565_10411736

Scaffold Ga0181565_10411736


Overview

Basic Information
Taxon OID3300017818 Open in IMG/M
Scaffold IDGa0181565_10411736 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)890
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019764Metagenome / Metatranscriptome227Y
F040951Metagenome / Metatranscriptome160Y
F062407Metagenome / Metatranscriptome130Y

Sequences

Protein IDFamilyRBSSequence
Ga0181565_104117362F040951AGGMIISYEEPPNREYFESEEDYQKAFKEWKEVFDSILEKHGNFGGS
Ga0181565_104117363F062407GGAMYKQKNLYRFKPTKRKLRGLGFVLDDYATYVDKKEVSFHYPYVYLGIAICYAGLFLVEKY
Ga0181565_104117364F019764N/AMKFWLLLFFIFSVQVYAADSEKKEWWEYIDGSVKIKFQFKEILNHQFLVEGVWTPQGGEAGHAGPAELVFKDIHNGSKSKINVEYFSLAFGHFEGLDIVLNKNDEWYFNPNVDLDKTYLV
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