NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187802_10001110

Scaffold Ga0187802_10001110


Overview

Basic Information
Taxon OID3300017822 Open in IMG/M
Scaffold IDGa0187802_10001110 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7095
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000078Metagenome / Metatranscriptome2550Y
F001220Metagenome / Metatranscriptome744Y
F007441Metagenome / Metatranscriptome351Y

Sequences

Protein IDFamilyRBSSequence
Ga0187802_100011102F000078GGAGGVDNQYCLRCNRQLEAGHKSVAVYMFAQTVGIKPRQKSAAKRICFCPQCSVSLAMGLPPEGALNLAAWDMIRELVSSDPALAEAAWETLRGITGLLPAAESDGLRATGTGGYFEF
Ga0187802_100011107F007441GGAGGMNKIAVLAMIAALAMLFSIPIEAQEAATFRGEISDSQCAFNVHSLTRSHEEMLKSKSGAAGHTRATCSIYCIERLGGKFVLVSGKNVYHLDNQDLPRKFVGEKVKLHGVLDPKAGIIHVVDVAPE
Ga0187802_100011108F001220GAGGVRRWLFHGVVVAVTLGTAIAGEPPRVIEVLADKDSRYKIAGEKKPEISVKACEQILLRITARKAKSWNRDGSIHGFSLLRAKDRSKVDGWDLLLKPGRQEFLMTAPEAPGEYVVVCTVICSMDHEGMSMKFVVTP
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Institute for Fundamental Biomedical Research
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