Scaffold Ga0187802

Basic Information
Taxon OID	3300017822 Open in IMG/M
Scaffold ID	Ga0187802_10030390 Open in IMG/M
Source Dataset Name	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300017822 Open in IMG/M

Scaffold ID

Ga0187802_10030390 Open in IMG/M

Source Dataset Name

Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	1913
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	2 (40.00%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (50.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

1913

Total Scaffold Genes

5 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

2 (40.00%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (50.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	35.9061	Long. (^o)	-76.1569	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: North Carolina

Coordinates

Lat. (^o)

35.9061

Long. (^o)

-76.1569

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001698	Metagenome / Metatranscriptome	650	Y
F013663	Metagenome / Metatranscriptome	269	Y
F014996	Metagenome / Metatranscriptome	258	Y
F037832	Metagenome / Metatranscriptome	167	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187802_100303902	F013663	GGAGG	MHTRPDREGDEQFRLLGAAWEEAVPHWQDEVARRFETDHWTPLVQRSRAYLEALRTLMDVLETAGHDTEF
Ga0187802_100303903	F014996	N/A	VTGGANRVHADLDALKGFHEALVRFRYAQRGVAERGDGEIEMTRASLAAKASRWQARLEQHQAELEACRAGGGEDVPDCTAYARAVEQAGERLEHIRRWQQRVDQEAGEFGGTASGFRDLLEADLPRAESQLLAIISRLEAARRVPAGEA
Ga0187802_100303904	F001698	GGAG	MSGVINDIDALAEFRAHLMQFNRDLAENFATIRGHWRELGEVWRDDMYRQFGEALDEVTPGITHYLSATEGHEAHLAALIERLRGYLETGLGAGAGAGTRRAETDRGQAT
Ga0187802_100303905	F037832	N/A	QRAGQLAAECEDLLFLTRELLKAAGLAGILGAEPLEAESLGPEEDDGDGRQAQLLGAYAEAGLLWAKVVGSTMALAGGLLDRGDWDGVRRLAGFLADAGEDGAAEEVRIQLGKAVWAAHREQLQGIGNAMPPAAVGKAIDALRAVLAGVPEDFPDRNREINRFLPPLAASVHAIMRAQEVDVPYSSRVEHIASGGVARYPDIVKVSLYEIAAEFDGICHRPGALFKSGPRVQAFWACASGRCR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0187802_10030390

Overview

Ecosystem & Geography

Associated Families

Sequences