NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187818_10000073

Scaffold Ga0187818_10000073


Overview

Basic Information
Taxon OID3300017823 Open in IMG/M
Scaffold IDGa0187818_10000073 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)27401
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (89.29%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000036Metagenome / Metatranscriptome4352Y
F038576Metagenome / Metatranscriptome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0187818_1000007312F038576AGGAGGMEKLGLAVSLLALSVAASLALSCGARSRGQDPLQSITLSPATADAQDYPNGQVQFIATGFYINPSHTVTPLSATWGVCYQYAPTSAISVTSTGLAQCASGAVGTYSVWANDPMPLGPGIYNCPASTACGGGCTIQATAQLTCP
Ga0187818_1000007326F000036AGGMSYKEIFWMACDSTEQLRAEYGPFHTRAEAEIEARKLGFGYLLRYEHLLGESEEIQEVRCIFIELPGAVPAVSEGIQVTLHTRCATCGESAVHDQPWQAEVWADIHEFEHSRHRVRLFEHARGRGLKEIGDWRG
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