NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187818_10033165

Scaffold Ga0187818_10033165


Overview

Basic Information
Taxon OID3300017823 Open in IMG/M
Scaffold IDGa0187818_10033165 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2218
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022810Metagenome / Metatranscriptome212Y
F053110Metagenome / Metatranscriptome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0187818_100331652F053110AGGAGGMKTNIRKCFGTGILSLGLLLAAGIPALAANSGTMTLAHDGILHGKTLPAGTYSVEWKTHSPEATVQFVQRYKVVLFTKGRVEKRNKKYEFNSVVCDVAADGSRSIIEIRFAGWNKVLVFDQNVSN
Ga0187818_100331653F022810AGGAGGMDIRRYLGMSIQAAALLLAFTLPGLAKDSRTVTLNRDVVLSGKTLPAGQYVVRWVTHSPQATVEFARDHKVLLSTEGKFEDRGKKYDSNMIVYETAADGAATISEIRFAGSSQVLVFNQ
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