Scaffold Ga0181552

Basic Information
Taxon OID	3300017824 Open in IMG/M
Scaffold ID	Ga0181552_10000987 Open in IMG/M
Source Dataset Name	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	21718
Total Scaffold Genes	35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	10 (28.57%)
Novel Protein Genes	7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (42.86%)
Associated Families	7

Scaffold Components

Scaffold Length (bps)

21718

Total Scaffold Genes

35 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

10 (28.57%)

Novel Protein Genes

7 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (42.86%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location Name	USA: Georgia
Coordinates	Lat. (^o)	31.972	Long. (^o)	-81.028	Alt. (m)	Depth (m)	0
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Georgia

Coordinates

Lat. (^o)

31.972

Long. (^o)

-81.028

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005967	Metagenome / Metatranscriptome	385	Y
F006322	Metagenome / Metatranscriptome	376	Y
F010877	Metagenome / Metatranscriptome	298	Y
F026712	Metagenome / Metatranscriptome	197	Y
F030556	Metagenome / Metatranscriptome	185	Y
F031255	Metagenome / Metatranscriptome	183	N
F035552	Metagenome	172	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0181552_100009871	F005967	N/A	MSVTISNLPYGDRRPDLFIDAMVKSAAVLNRFRLIDGVKAKVNVPIFDASLTFGNDLCVFDPQSAASVAEKEMTVETYKWSFLNCKDALESSYRGLLLKQGQHNPETMDAEFKDWVFDYFAKLSAQKALELAGTELTTE
Ga0181552_1000098711	F006322	AGG	MASKRNKRGDIIAGQGSELTELQNAFLERIKDEGIEKGSKIAKDMGYTNYYRDRRTEGTAFYREIMKFVESEAKSIEAAKGTNLSKLISIRDAALANGDMKVAMEAIKIINDMQGYKAPTRVEQTKLDITATIDLTAPKEEDHGYIDLD
Ga0181552_1000098712	F010877	N/A	MTRKSLILALVGGGLPKGELKAEMFKFHNSMVGKSKYFGREENPRTACGSCIQRVKTAIWKWYHYDEKSPNYAEIEFTGKLGAHNIPLYKFK
Ga0181552_1000098720	F026712	AGAAG	MYWNVTNTEQETLMDLVIRELRLRGQSMDNYNVQEVAYRQAISDGAMRTDNYFKQ
Ga0181552_1000098725	F031255	N/A	MVKYFNEVVTELQSKGTIFGAEYRKKNGEVTKINGRFGVAKFVKGTGQSSPSVLTVWDNNRKRYTSLIPDNIMSVTTSGTKYVKADEFLIEEL
Ga0181552_1000098728	F035552	GGA	MKIEDDLLIKADFQVLYYVLGEVAKKCKEDNGFTKVLLHLEQFVEIHKTRTNDMVTYRDTIEKARNEYRSLKLKYDGTVELLNETRELLHKVMNEKMDENVDNGF
Ga0181552_1000098734	F030556	N/A	MANDKVFVGKTQVVNTKYGEIVKVALGPQDFEVLMNAKNEKGWVNLEMKDKRDGGKYFQLQGEMKPRAAAAAVNDGDDMPF

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0181552_10000987

Overview

Ecosystem & Geography

Associated Families

Sequences