NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181552_10002348

Scaffold Ga0181552_10002348


Overview

Basic Information
Taxon OID3300017824 Open in IMG/M
Scaffold IDGa0181552_10002348 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13809
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (13.89%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005937Metagenome / Metatranscriptome386Y
F020790Metagenome / Metatranscriptome222Y
F062272Metagenome / Metatranscriptome131Y
F065620Metagenome / Metatranscriptome127N

Sequences

Protein IDFamilyRBSSequence
Ga0181552_1000234822F005937N/AMAKIDIDGDGKADFSINISQIITIGALFASIIGSYYTLSAKIDANATAVKKLKENEQKYTWPAQRKLEEEVQRMTVEFQAAMKDIEYSMRDIGKLREELDSKRDKK
Ga0181552_100023485F062272GGAMYNKNLIANIADKIIEEVDEHIDNTIHWQMDPSDFELNEFDDLYELELQVKQQLLFSLIKRVTK
Ga0181552_100023486F020790N/AMNITKQMMDEKLLQIAKFEQKYGTDHGITSVNAMKKYCTDQKYRDRVHAFNKASANTIKHYLKYGY
Ga0181552_100023489F065620N/AMKTDISELNTIISEFDHKMAKIELAINNGGNSLDKQEELLLDYQMYQARKFLAIKEINKIINK
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