NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181552_10007546

Scaffold Ga0181552_10007546


Overview

Basic Information
Taxon OID3300017824 Open in IMG/M
Scaffold IDGa0181552_10007546 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7307
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F043964Metagenome / Metatranscriptome155N
F097449Metagenome / Metatranscriptome104N

Sequences

Protein IDFamilyRBSSequence
Ga0181552_100075463F043964AGGAGMFIIKNTVTGRIHKEPSRARTGWRGGEYASERAAKAGVTRTLKYYAKAIQQVADVVAEGKSEYYAPLYNAYRDATDPDLGRTHVNDPATYEVMTLEQYGDPQDTRTGRCPYNGETITRTIPLNDVGTHMDPLCESHWTN
Ga0181552_100075464F097449GGAMLSTKQYRTIFNTIAADHGIDWVGTWTDDVLGRGWTREGEPLRTVTHSIGHNDPAVVQKFIKQLRASVGPEHDVRLTSYYIKATCEIHEDLWHSKELVDGD
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