NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181552_10008655

Scaffold Ga0181552_10008655


Overview

Basic Information
Taxon OID3300017824 Open in IMG/M
Scaffold IDGa0181552_10008655 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6759
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053979Metagenome / Metatranscriptome140Y
F059720Metagenome / Metatranscriptome133Y
F065836Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0181552_100086555F059720AGGAGMKENTIITLVMNNGAEIIGKYISDDFNSITIYKPRMVQASQQGVGLVNGITMTGIEPNGDFQFPKSSVMFMIETVEELAAGWTQQTSGIAVPTKSGLIK
Ga0181552_100086557F065836AGGAMSDIRDKYTFVENKDKKWQCIGLTAEAGKYQGLVYQYGEVRVIENEEKTSASLQFDFDVVDSNGLPEEMLDDDLYELMGDILADIIEQQIAGDALQYVNTDD
Ga0181552_100086559F053979GGAGLERARLMRNLRTSKYKQPRYFVNQNGNEWEVVEFPTNDIVSTFCRKIDAELLSERLTKNKPFGDRPLPKFLKGNKHVDISE
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