NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181552_10055756

Scaffold Ga0181552_10055756


Overview

Basic Information
Taxon OID3300017824 Open in IMG/M
Scaffold IDGa0181552_10055756 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2303
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F053902Metagenome / Metatranscriptome140N
F078418Metagenome / Metatranscriptome116N
F103098Metagenome / Metatranscriptome101Y

Sequences

Protein IDFamilyRBSSequence
Ga0181552_100557563F078418GGAMKTEQLESINLMTYKQLKNTLYTLRCRLAEAQKTPDEYAQCYVNELQQAIISLDAVKKYF
Ga0181552_100557565F103098GAGGMLNAKNVDRMEDCGNGFGWSIIHFDDEFYGNCYEFAVLRDGAPCYDSGVTSDIVRGDWTLMDKLKCMVQDLHSDRLAS
Ga0181552_100557568F053902AGGMWKVKMVRRLTDKVSPDVICESTFTYELPADYGDMLNGLDSIDEELHQSIFESIQQHLFKKFGKSLFFGLDLIPPYEEHED
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