NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0181552_10116598

Scaffold Ga0181552_10116598


Overview

Basic Information
Taxon OID3300017824 Open in IMG/M
Scaffold IDGa0181552_10116598 Open in IMG/M
Source Dataset NameCoastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011501BT metaG (megahit assembly)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1459
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh → Coastal Salt Marsh Microbial Communities From The Groves Creek Marsh, Skidaway Island, Georgia

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)31.972Long. (o)-81.028Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003106Metagenome / Metatranscriptome507N
F048963Metagenome / Metatranscriptome147N
F099219Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0181552_101165981F003106N/AMSEENEESKDDGSKATRGPTWRMREWGRTAYRNRQAKLRMDGESSQTESAKRLLRVMAPRLGKRVDDFMYTFGGNTEHTTPLFLTFVLDMCPYQIASMALQTLLDNLQFNLPVGRMAYKIGKAFENQARWDKAMELMHPHKKDLLALDDRSKAMKLKQFYDYEEERFTLWDSKCKTGLGAWLLEEIRIETGVWEIGFASGQKGHKPERLCVPSGSYTDWVKRFDAWKETTRVFKMALSDEPVDWYELIGGGYSLKHMPPQEFF
Ga0181552_101165982F048963AGGAVNENYAEFEPSDLPLDYSLIDHDEVKRGYDFFYANNQITGFKMDENGNYVRDQDGKLIAYRTSKQRHQPKSWFNNYYQ
Ga0181552_101165983F099219GAGMIPTGLFSRTIHGYDEWLNRYNPYDDEIDEELEEHLEKMREMDNIDAQKDYCDDHHLKYGDIEAWL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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