 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017924 Open in IMG/M |
| Scaffold ID | Ga0187820_1000040 Open in IMG/M |
| Source Dataset Name | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 21952 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (57.14%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (50.00%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion. |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: North Carolina | |||||||
| Coordinates | Lat. (o) | 35.9061 | Long. (o) | -76.1569 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000512 | Metagenome / Metatranscriptome | 1064 | Y |
| F000696 | Metagenome / Metatranscriptome | 931 | Y |
| F000739 | Metagenome / Metatranscriptome | 913 | Y |
| F000781 | Metagenome / Metatranscriptome | 895 | Y |
| F001619 | Metagenome / Metatranscriptome | 662 | Y |
| F006229 | Metagenome / Metatranscriptome | 378 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187820_100004011 | F000696 | GGA | MPVVGSSAYNSAGQITSLVRSLLNDAQGNLFTDTILLPYANSAYRKVQRALGNAGAGGFIQDDVLLVVTAVAETDSSLQVSITDATAPPNQLPTDLLVPLKIWERPNGSTDDFLEMVDVSQHGGLPSRVQDVTLSIWEWRADGIYFLGATQDTQIRLRYAKAYPDFTDSTSPVLIRNAQEAIAYATAALAGWARGSPLAEKWDDAAADAIEDLVSAAVRREQQSARRRRPFSSRSGYAPF |
| Ga0187820_100004012 | F000739 | N/A | MKRLELKQFELWIKGIVAAAISGGAGGILTGFAAVGIDPQHFNLQTGMGATLRIAAAAALINAVIGVAAYLQKSPLPNE |
| Ga0187820_100004013 | F000512 | N/A | MIRVLRETHDTPENIVRRLKRAGGINRFDEPNYRAVWGWNRLSWIGGKFVEHDPVTGSLLREVVELRQEPKYPAVNRWHIERWVPPEVYGSPRLWYAQTIERENGMSIPALGPYPSRGEYEHCFTLEGPSGEFIQLTPAAAEHIARAIEFSRRFPRSCKKRSLDDRAQREERAYDAWAYDQLDNAVPAFHNQAFVTVA |
| Ga0187820_10000402 | F000781 | GAG | MLTVAQLAPIKDRDPYLYETLTKIVSSVNATSQAAGGDPSTPTPAPTTVASINVQASNGWFDISVTDPSNSRPGLFYFAESDTTPAFNSPRVYFMGASRNLYLQLGNQTLYWRAYSQYVGSLPSAPITFGTPPTAVAGGGSTGPAPLPSSGSGVLPNGQVRGGNGFGINPGSRITRNILL |
| Ga0187820_100004021 | F001619 | N/A | WCSMLNWFRKVLQLKYVGLLEADVARLRAENRALMNSLLGTAGFPPVEFPEAPKPQALPRLRKRSWHQIQAWRQSGAERDAADNAEFVGAAKGNGPVPHS |
| Ga0187820_10000406 | F006229 | AGG | MLTATATESSTVSLVNISTEKWPPRHRTYFGSLVICSPETGEPFAITPIRGCKGVIDIGDKRFMDYRVTAREVAEDIARELNGDSGEGSFHGVFVAAGETPTESELVDARRRLEEFHRRLVASADLEWERTRNPMFITDLERRAARQLGLEKPWVYDSKPLAECPVCAEKIKHGVAVCKSCGAILDREKAAQYGLGPQEKHRKDGSASQERVGKQPHEAGK |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |