NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187820_1026365

Scaffold Ga0187820_1026365


Overview

Basic Information
Taxon OID3300017924 Open in IMG/M
Scaffold IDGa0187820_1026365 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1487
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000859Metagenome / Metatranscriptome858Y
F007338Metagenome353Y
F023802Metagenome / Metatranscriptome208Y

Sequences

Protein IDFamilyRBSSequence
Ga0187820_10263651F023802GGAGGVNTYLQGRKITAAQDYERPSVEVIHLIRKLRWIGMEEEAERVETRLHETTLAGG
Ga0187820_10263652F000859GGAGMPREEIRSARSTGPTGSEFFNAVQEMSRDWMGRATAEVELGLKLSKNLTAAHSVPDAITAYQEWLSDEMSARAEDARLLMSNGQKIMDASSRLLSSSWTSGSMST
Ga0187820_10263654F007338GGCGGMAEPLERNSLELRMAFHNAVSRFQDWTANVAEPKVRLHGRFRPISEVCEEVANLSNLLPEFIRSILYEETKADDDVFALKLDETYRGAGRHLLRLIEMRKDEIRRRRALKSQPLNHKSGR
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