 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017925 Open in IMG/M |
| Scaffold ID | Ga0187856_1000058 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 106424 |
| Total Scaffold Genes | 98 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 73 (74.49%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001966 | Metagenome / Metatranscriptome | 610 | Y |
| F002013 | Metagenome / Metatranscriptome | 604 | Y |
| F009891 | Metagenome / Metatranscriptome | 311 | Y |
| F025246 | Metagenome / Metatranscriptome | 202 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187856_100005843 | F025246 | GGA | MQIAVRIGQKGLKPHRSVAAKGDKMDLRCPKCNSTDFKKVSLAYQEGLYGSDARTRLSAALVGGNGPDLIVGRATTRVSNQSALSKQLSPPVKWSYLKVGSWSVLAFLCVGWLVFYVNTVTTNSSTVSSPPLTFFTLISAAIFVVLLFLVWKHNHSTYQTRFAEWDRTFLCSRCGAVSEQPLGKGRPDSV |
| Ga0187856_100005845 | F002013 | AGGAG | MEKAHLYEALYLVNHGIDEAVRGVQRLKKSPHLFMEAYHKSMAGLERRRSRINLQFMLEMRKLEEDDESRFEEEYNVWLSDEPLTNDEICQLMRVVERERKLERKPPLVQFLPRSKRPKNAPKKTEGVHSSHKLTGSPTHASGVESRVPEEAHA |
| Ga0187856_100005869 | F001966 | N/A | MDPWDKLDSYGEWVLLGTRQGPDAPPLAIDEELLDAAREAWPHVLAHVRGELSDKELGPERTALAADIWDRVLRSVAKTRQRNRDHRPPISDLESYLIGVFHHRFNRLLKKEQKRAETIELVSSVLDLERFEAARDTRWAEQLEQAIAVRQIADRMDGWTKKVWQARQYGYSWREIASWLGVSEPQAKMKFQYGLEKTRQSIVRLLKGAKPKRPD |
| Ga0187856_100005883 | F009891 | AGGAGG | MSIINKAPQHVKREYELEEPVALVVEKYATFIDSTPDHVVNSALKMLLWKDRHFMNWRKQQQQAARKDAPTSTTQKAPAKA |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |