NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187856_1000094

Scaffold Ga0187856_1000094


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1000094 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)86488
Total Scaffold Genes93 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)71 (76.34%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000188Metagenome / Metatranscriptome1692Y
F000408Metagenome / Metatranscriptome1172Y
F005283Metagenome / Metatranscriptome406Y
F059669Metagenome133Y

Sequences

Protein IDFamilyRBSSequence
Ga0187856_100009417F005283N/AMVEVTQLQMQTLERLFAAGFRPIAIPPYESALCVHRGECAAVLAPVENGGLRLLAPATVMVDGNLSVRLKRAAGDVFVWKKKEVAATAERLKELEAFRAELVGILEMRGMQ
Ga0187856_10000946F000188GGAGGMSVKPEMAFDVCWEVYRGAREVLEAKRGITALAFEADTKYSWRPDLRPKLKDWVADFALAGQAALEGPQQASRMVLFRLYYLGLTPYESARHFLGLSERSWVNWSEEIRRRCGEELLRRALFPPRKYFGGA
Ga0187856_100009489F000408GGAGMSQTSEKMARQRSERRISVHLPLRVRGRDTRGFAFEEDTASENLCRSGAAFRTRFDLAIGSNLEIRIPMQGYPSRRYENDFETQGRVVHVSDSQPDGERLVGVQFVGPRFQRVFRSESAA
Ga0187856_10000949F059669AGGAGGVNPYYTQPPWEFLLTASRNTLQSYELSRLAHAANLRKELGALLDQYLEENTAAMLARWLMDQRERTVLGEETASAPAPPENKGRRASDNFLGDRIVPPRASRVRT
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