NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187856_1000136

Scaffold Ga0187856_1000136


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1000136 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70545
Total Scaffold Genes84 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)58 (69.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029003Metagenome / Metatranscriptome189Y
F052324Metagenome / Metatranscriptome142Y
F075569Metagenome118Y

Sequences

Protein IDFamilyRBSSequence
Ga0187856_100013627F052324GAGGLSLLDTVLQTTPNYPARGMGFGGSFIFGAISAVSVLLITVGVFYVLIKLGSLLDALKEKTETGSTKK
Ga0187856_100013633F075569N/AMGLRMASDPGEKRRVTERGPIIDAGVPLTLGFVAYVVAAVSTFSIHQLTVAGLDPLEIAVLTSIEGLLVIGLGYGSIVLLGGICSLNIAGLISRLTKTKQVIRPKDEKPSQLGKILIEKSHLVYLPLVLFFTSLALGWDIYTGDPSSPRTASSRTTTTRPGTLQLVLHSLNFLATPQHTTGVLFSLRLTPGLIAITLISGVAPSIALPYFRRFKIIGINGGPFHTTVLTAVLGPIIGLNILVSLLDIFYKVLWAQAPTSYHYALIVLIGFSLHYSAGTYIGRGKAESIIHGRLANGSYDQKRVVVVDRTLNPNAEIIELGSLLRPQLD
Ga0187856_100013659F029003N/AMCEREPATRKTKFKAQYLQSTSAAVFDEESLVDVEMTKRICEGCLKKLQDAKNVTDLTYERL
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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