NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187856_1000306

Scaffold Ga0187856_1000306


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1000306 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45907
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (60.87%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000677Metagenome / Metatranscriptome940Y
F001303Metagenome / Metatranscriptome727Y
F001591Metagenome / Metatranscriptome667Y
F003876Metagenome / Metatranscriptome464Y
F020937Metagenome / Metatranscriptome221Y

Sequences

Protein IDFamilyRBSSequence
Ga0187856_10003063F001591GGAGMDRRRERRLNLELPVRIWGVDKMARPFAELVRVRNVSNGGALLIGVRSKVQTGEVLDVQHGASRAQFRIVWMSLSGEAGIQALAFEPPILGIGLPKVFEMVWTG
Ga0187856_100030631F020937GGGGGMKTYQHELAHLYEHRKNVFRFSSASLFQSLITASVIGVVVAFIGFALNTVRMQGNASWYVSAATGAVVEAVIVTVLVTIVIEQRRKRSIRRTLELAFLNHHIRNAITQMSMAQYVADPQQHERLVREAVGRISEALFGIANSADLTGLSLEVDLKGIQLTHEGETREQEEEKKKAS
Ga0187856_100030633F000677N/AMKLLLPILLLGVLSMSVAMQAQSFTASSSFALPDAPSQHPFWTVENKVNASILAALVAADAVTTQRGLNQGLREVNPLMRSFVTRGAAGEAAGSALGFGAGVGVVYLLHRSHHYKAERITMRLIVAGEGGFVANNIIAIR
Ga0187856_100030639F001303GGAMDRENRESMEDIHLRILRVTDDLRVIQRELNCAAMQAPTDPELMEALADPPEMESIQVLKSALDQMRHFLWFYMQVVTSDSEMGEKFRETLRQDAPVRAPEMEQQFQSATDDIMLRYLADSKFRKPN
Ga0187856_10003067F003876AGGMATTKIERAGVCFGIGRQGGSIVVDVRPHHDTISALRGVQVGFELLNGIPLEQAKKILDVLNENVIGVFVTTASGDKTEAAAG
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