NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187856_1001287

Scaffold Ga0187856_1001287


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1001287 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)20367
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)16 (76.19%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000175Metagenome / Metatranscriptome1756Y
F004185Metagenome / Metatranscriptome449Y
F014038Metagenome / Metatranscriptome266Y

Sequences

Protein IDFamilyRBSSequence
Ga0187856_100128716F014038GAGMKVTLEDALSLLSKYVEERTPVLAAFVTPSLSVARVVGTIRVSVVGGVPHLLIGRDDGESDQIKFRLSDCVFEYGDFREAGAEDYGAHKFEGFLVVGSKKGDTLSLFEMKS
Ga0187856_100128720F000175N/AVDEGRKRVLLIAASILAARKLAQYEGGRRVPATVTAISDALHWAEQIMEEIDRRWSGPMGKTG
Ga0187856_10012874F004185AGGAGGMSLEKEFVRDGKRRIIGSVTTGYVGSFETIVRDEQNNITGSTSERFNTTRDEHGKLVSINTADAGLLIGEHNKK
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