Scaffold Ga0187856_1002668

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187856_1002668

Scaffold Ga0187856_1002668

Overview

Basic Information
Taxon OID	3300017925 Open in IMG/M
Scaffold ID	Ga0187856_1002668 Open in IMG/M
Source Dataset Name	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	12958
Total Scaffold Genes	16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	14 (87.50%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location Name	USA: Minnesota
Coordinates	Lat. (^o)	47.5028	Long. (^o)	-93.4828	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F028922	Metagenome / Metatranscriptome	190	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0187856_100266812	F028922	AGG	MPPSVHRSTAKQFLLVVSCILSLCVPAPVLAQRAVARPAGGVVHISAPPIPHIMISPAPIIHAPILTPRMQIGSYAGVGMTRFRPRRPIRPFPPVFVLYESPAFLGGPFWGFNSCWWGSCDLFWPWLGYTTVSSPGPTNYVYQVYETPVYYGEETPDLPQLFLKDGTVLNVTDYWLVDDQLHFTMIEEEGGKPVEHVIPFDALDLQRTVDVNTGRGFRFMLRNEPFEQYVRDHPEGPPPVITPHQ

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