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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300017925 Open in IMG/M |
| Scaffold ID | Ga0187856_1004852 Open in IMG/M |
| Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8795 |
| Total Scaffold Genes | 14 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (100.00%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (100.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Minnesota | |||||||
| Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013913 | Metagenome | 267 | Y |
| F014639 | Metagenome | 261 | Y |
| F020887 | Metagenome | 221 | Y |
| F025336 | Metagenome | 202 | Y |
| F054526 | Metagenome | 139 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0187856_100485210 | F020887 | GGAGG | MRTKITFYGEIAGNIWMPAVECTKAFHLELTRIPRHSKTRTYPGIAPRSMEITCLRDTLLHLTNDGDFQSCAITWARLEVSHYFGGEADGTRTVKIRTRVWDLRGVGEDADCFAEVHS |
| Ga0187856_100485211 | F054526 | AGGA | MSNSQEHLSAPELIEQVIGSGLLSFDDEPHFSWQGCEYCADGLGATVYDLQGYRGLEDRESFDFQVCGDCINRLYYGTEEN |
| Ga0187856_100485212 | F013913 | AGGAGG | MQVTPSMRGSFFAGIGLWVLVWAMLFKGDEIAKAGGFERWVSSDRCLRWIRNHKSTSLIGTELCNYAHTGLDPLGVTFALGGTFTNLLVIYFLLPLLDKAKRGGKALNLQL |
| Ga0187856_100485213 | F025336 | GGAGG | MLIALIAAVEAMLYSASRSKLGHARKQQVLMGNSLDSARALPLVDEYLRRKTAGASRVQTFVASKLAEVCRRAVHTRSFEYLVLHLIRTAIKRRSKYLNIQRRVTICK |
| Ga0187856_100485214 | F014639 | AGGAG | MSEIIQSTNAPVSIETGFLNRKWKLIRFFFAKRAFESKLEGILRAAAGHEGNSLPPGEYQYQLLSSEADSLCSEFADHWGLDVDLLRARIPGLAKLAGLSVPPPTKKYAGLVCLGMVVVPLALFLIGAMVGLVSVGFYLVGGR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |