NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187856_1012700

Scaffold Ga0187856_1012700


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1012700 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4703
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (77.78%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002929Metagenome / Metatranscriptome520Y
F036259Metagenome170Y
F100369Metagenome / Metatranscriptome102N

Sequences

Protein IDFamilyRBSSequence
Ga0187856_10127006F002929AGGAGGMSQSFRPVKEIWNAHSSCFVEPEELIMLLHDIAARVGTASDEHEYGENKAVWLEDGNKVLNYMEADERFNAASFKDSMEEQGVVINQNDLATLIDNMRSLVNQWRSSLGEHGELVFYIDA
Ga0187856_10127007F100369GGAGVPTDDTIRKRDQKRIREWFLTLGSPVQSREIRVVLQYLQALDVCDLLTQSAERQAELASAALFRFGLDTLATGFWIACVATDEWLRGQGEVHIPSSLERTIATLPPQARNMLDEVVNSGFVNDSKRTLLKDVLNPAIHGDALVNVVRIGSALAQGKNWAQYLTTLMNELTHNFAVLIRELAGIDLASMAGKYTAAARQD
Ga0187856_10127008F036259GAGMFGAHHRGFAWKEIAKVLHMTRAVARATFWREIKRSRSKSVEAQPPATVIQDERDSDTPKLRKPRASR
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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