Basic Information | |
---|---|
Taxon OID | 3300017925 Open in IMG/M |
Scaffold ID | Ga0187856_1017610 Open in IMG/M |
Source Dataset Name | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 3763 |
Total Scaffold Genes | 8 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (62.50%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (100.00%) |
Associated Families | 2 |
Taxonomy | |
---|---|
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae | (Source: IMG/M) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | USA: Minnesota | |||||||
Coordinates | Lat. (o) | 47.5028 | Long. (o) | -93.4828 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001110 | Metagenome / Metatranscriptome | 775 | Y |
F001851 | Metagenome / Metatranscriptome | 626 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0187856_10176101 | F001110 | AGGA | VLDMLAGYSGAHGSLIQMMNLFTPIPSWIASRWRISAMIACAVGIAAACRICLEPDRAKLQRAERNRKKELRALADRISTYGRDVHQRYPDGDVVVSEHDLAEQFRKRPDTVATALNILLGERKVQKAPLNGYWKLNV |
Ga0187856_10176105 | F001851 | AGAAGG | MSATSISLGLLIVLFVILLLQRMRTLKPQIAGFRSQRMCPSCGLITSRLKASCLECGKPFTAVVYSTSKK |
⦗Top⦘ |