NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187856_1057455

Scaffold Ga0187856_1057455


Overview

Basic Information
Taxon OID3300017925 Open in IMG/M
Scaffold IDGa0187856_1057455 Open in IMG/M
Source Dataset NamePeatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1674
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland → Peatland Microbial Communities From Minnesota, Usa, Analyzing Carbon Cycling And Trace Gas Fluxes

Source Dataset Sampling Location
Location NameUSA: Minnesota
CoordinatesLat. (o)47.5028Long. (o)-93.4828Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008540Metagenome331Y
F011572Metagenome / Metatranscriptome289Y
F049568Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0187856_10574551F049568GGAGGLNYQHLHFQFPAKPFQRWHVIEDKTVPRGLRFRHARQPGESPDPKVNFGVEELSARLEHAGVEYMRIALDNNRKSMDVADMVLSMDRIEGESPDDIWHPVLPWVRDNGFYAVCMREAMPFQDACHLFGFDIPCGKPSVPKRIKRDVARGKTSLFGGLLETRELNQWDLVHTVVLADGETTFEVATYNPGNRWPDAWTSGAALASPRGGAILTGHPVKIGDLIQITGAMPNGQIKGNCLIWDIDHDLVVWDVKPELRAWQGQIYLSVLNELHGGPANLDVQTASNLDLAKVRDHKL
Ga0187856_10574552F008540GGAGGLKTYQPERALIARQTRKENRDELAKMLAQIAMERAARLPPSILPVSLETQFQESICRTRQDVQRAKDVQSAQILLWLQS
Ga0187856_10574553F011572GGAGGMDTNRIFTNLFGGWLTAADKAAAATINYTKLTVIPRACELTQKATLATGKTLVKVGTKLTDRCTTK
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