NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187824_10000016

Scaffold Ga0187824_10000016


Overview

Basic Information
Taxon OID3300017927 Open in IMG/M
Scaffold IDGa0187824_10000016 Open in IMG/M
Source Dataset NameWetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)24318
Total Scaffold Genes27 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (70.37%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment → Coastal Wetland Sediment Microbial Communities From The Mid-Atlantic And Southeast Atlantic Coast Of Usa, Responding To Salinity Intrusion.

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)35.9061Long. (o)-76.1569Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027281Metagenome / Metatranscriptome195Y
F056024Metagenome138Y

Sequences

Protein IDFamilyRBSSequence
Ga0187824_1000001619F056024N/AMNFPRLATPVLWLLPLGLQCVIALVMLRRGLVAQFPLFFCYTVLLPIRDFTLYFLPNPGDRYSSVFWWGEAAAILLSFGIIFEISWHFVRRYPFLRLFLRVLWIAAVVAGAAALAMLIWTRGAPAGTDVALSWITLSERSARFMQVCLLIVAIAMMSRLGLAWRDHSLGIAAGFGVFAALDLVLLELRGHLHVLSGGTFVLLRSAAYNLGVLIWAFYFLRSQGGHPIDRLPGNEMANWNDVVSEHVDKWYRR
Ga0187824_1000001620F027281GAGMVSTITILLASVLSLYLVWTIFRPGLPQIKSLEDWEAQNHAVDPGLFRVLLDPAEENYLRQSLPPHEFRLFQRKRISLALRWLNLVGQNAAMLMKLGQLAKAGANPKLAKEAEDLIYAALRLRLNTTLAEPCLWLKWCFPGWTLSFPTVEIPYEELLGYLSRVRQHRQWDLEQALLTG
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